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Streptavidin is a tetrameric protein, meaning it is composed of four identical subunits. Each subunit has a molecular weight of approximately 13 kDa, resulting in a total molecular weight of around 52 kDa for the tetramer . The protein’s secondary structure consists of eight antiparallel β-strands that fold into a β-barrel tertiary structure. The biotin-binding site is located at one end of each β-barrel .
The tetrameric structure of streptavidin allows it to bind up to four biotin molecules simultaneously. The binding pocket for biotin is highly complementary in shape and forms an extensive network of hydrogen bonds with biotin, contributing to the high affinity of the interaction . The dissociation constant (K_d) for the streptavidin-biotin interaction is on the order of 10^-14 mol/L, making it one of the strongest known non-covalent interactions .
Streptavidin’s high affinity for biotin makes it an invaluable tool in various applications, including:
One of the main advantages of streptavidin is its non-glycosylated nature, which reduces nonspecific binding compared to other biotin-binding proteins like avidin . This makes streptavidin particularly useful in applications where low background signals are crucial.
However, the presence of endogenous biotin in mammalian cells and tissues can lead to background signals in certain applications. To mitigate this, blocking kits are available to reduce nonspecific binding caused by endogenous biotin .