Pfu DNA Polymerase

Pfu-DNA Polymerase Recombinant
Cat. No.
BT15439
Source
Escherichia Coli.
Synonyms
DNA polymerase, EC 2.7.7.7, Pfu polymerase, Pfu-DNA Polymerase.
Appearance
Sterile liquid formulation.
Purity
Usage
Prospec's products are furnished for LABORATORY RESEARCH USE ONLY. The product may not be used as drugs, agricultural or pesticidal products, food additives or household chemicals.
Shipped with Ice Packs
In Stock

Description

Pfu DNA Polymerase is a thermo-stable enzyme having a Mw of about 90kDa. Pfu DNA Polymerase is derived from E. coli that and cloned from Pyrococcus furiosus strain Vc1 DSM3638. Pfu DNA Polymerase replicates DNA at 75°C, catalyzing the polymerization of nucleotides into duplex DNA in the 5´ to 3´ direction in the existence of magnesium. Pfu DNA Polymerase possesses 3´ to 5´ exonuclease (proofreading) activity. Base misinsertions that take place during polymerization are swiftly removed by the proofreading activity of the polymerase. Therefore, Pfu DNA Polymerase is suggested for use in PCR and primer extension reactions that require high-fidelity synthesis. Pfu DNA Polymerase-generated PCR fragments are blunt-ended.

Product Specs

Introduction
Pfu DNA polymerase, an enzyme found in the hyperthermophilic archaeon Pyrococcus furiosus, plays a crucial role in replicating the organism's DNA. Its in vitro application lies in Polymerase Chain Reaction (PCR) for rapid DNA amplification, where it synthesizes new DNA strands during each extension step. Pfu DNA polymerase exhibits superior thermostability and 'proofreading' capabilities compared to other thermostable polymerases. Its 3' to 5' exonuclease proofreading activity, absent in Taq DNA polymerase, allows it to correct nucleotide misincorporation errors while moving along the DNA from the 5' to 3' end. Consequently, Pfu DNA polymerase generates PCR fragments with higher fidelity than Taq-generated ones, making it preferable for molecular cloning of PCR fragments over the traditionally used Taq polymerase. While Pfu excels in techniques demanding high-fidelity DNA synthesis, it can be combined with Taq polymerase to leverage the speed of Taq while maintaining Pfu's accuracy.
Description
Pfu DNA Polymerase, a thermostable enzyme with a molecular weight of approximately 90 kDa, is derived from E. coli containing the cloned gene from Pyrococcus furiosus strain Vc1 DSM3638. This enzyme facilitates DNA replication at 75°C by catalyzing nucleotide polymerization into duplex DNA in the 5' to 3' direction, requiring the presence of magnesium. Its 3' to 5' exonuclease activity, also known as proofreading, enables the swift removal of base misinsertions during polymerization, making Pfu DNA Polymerase highly suitable for PCR and primer extension reactions demanding high-fidelity synthesis. The PCR fragments generated by Pfu DNA Polymerase are blunt-ended.
Physical Appearance
Sterile liquid.
Formulation
The formulation contains 50mM Tris-HCl (pH 8.2), 1mM DTT, 0.1mM EDTA, 0.05% CHAPS, and 50% glycerol.
Stability
While Pfu DNA Polymerase remains stable at 10°C for up to 5 days, it is recommended to store it below -18°C. Avoid repeated freeze-thaw cycles.
Unit Definition
One unit (U) of the enzyme is defined as the amount required to catalyze the incorporation of 10 nanomoles (nmol) of dNTPs into acid-insoluble product over a 30-minute incubation at 75°C.
Applications
Pfu DNA Polymerase is ideal for various applications: 1. High-fidelity DNA amplification. 2. Achieving low error rates in DNA synthesis due to its 3'-5' exonuclease activity. 3. Utilization as one of the most thermostable DNA polymerases available. 4. Generating blunt-ended PCR products due to its lack of extendase activity. 5. Blunt-end PCR cloning. 6. Performing reactions at an optimal temperature near 75°C. 7. Maintaining 95% activity even after a 1-hour incubation at 98°C.
Synonyms
DNA polymerase, EC 2.7.7.7, Pfu polymerase, Pfu-DNA Polymerase.
Source
Escherichia Coli.
10x Buffer With Mgso4
200mM Tris-HCl (pH 8.8 at 25°C), 100mM (NH4)2SO4, 100mM KCl, 1% Triton X-100, 1mg/ml BSA, 20mM MgSO4.
Pcr Protocol
Add the following components to amplify 1kb DNA template:
0.2µl Pfu-DNA Polymerase.
4µl 2.5mM dNTPs.
5µl 10x buffer with MgSO4.
1µl Primers mix (10µM each).
1µl Template.
38µl ddH2O.
Amplify using the following cycling parameters:
Heat Soak: 1 cycle at 94°C/4 min.
Denaturation: 30 cycles at 94°C/30 sec.
Annealing: 30 cycles at 55°C /30 sec.
Extension: 30 cycles at 72°C /90 sec.
Final: 1 cycle at 72°C /5 min.

Product Science Overview

Background of Pfu-DNA Polymerase Recombinant

Introduction

Pfu-DNA Polymerase is a DNA polymerase enzyme isolated from the hyperthermophilic archaeon Pyrococcus furiosus. This enzyme is renowned for its exceptional thermostability and high fidelity, making it a popular choice for various molecular biology applications, particularly the polymerase chain reaction (PCR). The recombinant form of Pfu-DNA Polymerase is produced by cloning the gene encoding the enzyme into Escherichia coli and expressing it in these bacterial cells.

Discovery and Significance

The discovery of Pfu-DNA Polymerase dates back to the early 1990s when scientists identified its superior fidelity compared to the widely used Taq DNA polymerase . The enzyme’s high fidelity is attributed to its 3’ to 5’ exonuclease activity, which provides a proofreading function, allowing it to correct nucleotide incorporation errors during DNA synthesis . This proofreading ability results in a significantly lower error rate, making Pfu-DNA Polymerase an ideal choice for applications requiring high accuracy, such as cloning and sequencing.

Preparation and Expression

The recombinant Pfu-DNA Polymerase is prepared by inserting the gene encoding the enzyme into a plasmid vector, which is then introduced into E. coli cells. The expression of the enzyme is induced, and the cells are harvested and lysed to release the enzyme. The enzyme is then purified using techniques such as affinity chromatography . The recombinant form retains the high fidelity and thermostability of the native enzyme, making it suitable for various research applications.

Applications

Pfu-DNA Polymerase is widely used in PCR due to its high fidelity and ability to amplify DNA with minimal errors. It is particularly useful in applications where accuracy is critical, such as:

  • Cloning: Generating PCR products for cloning into vectors.
  • Sequencing: Amplifying DNA for sequencing to ensure accurate results.
  • Site-Directed Mutagenesis: Introducing specific mutations into DNA sequences.
  • Blunt-End Cloning: Producing PCR products with blunt ends for cloning.

Conclusion

Pfu-DNA Polymerase recombinant is a valuable tool in molecular biology, offering high fidelity and thermostability for various applications. Its ability to correct errors during DNA synthesis makes it an essential enzyme for researchers requiring precise DNA amplification.

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